У меня есть конвейер обучения scikit для масштабирования числовых функций и кодирования категориальных функций. Он работал нормально, пока я не попытался реализовать RandomUnderSampler из имблэрна. Моя цель — реализовать шаг подвыборки, так как мой набор данных очень несбалансирован 1: 1000.
Я обязательно использовал метод Pipeline из imblearn вместо sklearn. И ниже код, который я пробовал.
Данные кода работают (с использованием конвейера sklearn) без метода подвыборки.
from sklearn.pipeline import Pipeline, FeatureUnion
from sklearn.preprocessing import OneHotEncoder, StandardScaler
from imblearn.pipeline import make_pipeline as make_pipeline_imb
from imblearn.pipeline import Pipeline as Pipeline_imb
from sklearn.base import BaseEstimator, TransformerMixin
class TypeSelector(BaseEstimator, TransformerMixin):
def __init__(self, dtype):
self.dtype = dtype
def fit(self, X, y=None):
return self
def transform(self, X):
assert isinstance(X, pd.DataFrame)
return X.select_dtypes(include=[self.dtype])
transformer = Pipeline([
# Union numeric, categoricals and boolean
('features', FeatureUnion(n_jobs=1, transformer_list=[
# Select bolean features
('boolean', Pipeline([
('selector', TypeSelector('bool')),
])),
# Select and scale numericals
('numericals', Pipeline([
('selector', TypeSelector(np.number)),
('scaler', StandardScaler()),
])),
# Select and encode categoricals
('categoricals', Pipeline([
('selector', TypeSelector('category')),
('encoder', OneHotEncoder(handle_unknown='ignore')),
]))
])),
])
pipe = Pipeline([('prep', transformer),
('clf', RandomForestClassifier(n_estimators=500, class_weight='balanced'))
])
Код, который не работает (используя конвейер imblearn) с методом подвыборки.
from sklearn.pipeline import Pipeline, FeatureUnion
from sklearn.preprocessing import OneHotEncoder, StandardScaler
from imblearn.pipeline import make_pipeline as make_pipeline_imb
from imblearn.pipeline import Pipeline as Pipeline_imb
from sklearn.base import BaseEstimator, TransformerMixin
class TypeSelector(BaseEstimator, TransformerMixin):
def __init__(self, dtype):
self.dtype = dtype
def fit(self, X, y=None):
return self
def transform(self, X):
assert isinstance(X, pd.DataFrame)
return X.select_dtypes(include=[self.dtype])
transformer = Pipeline_imb([
# Union numeric, categoricals and boolean
('features', FeatureUnion(n_jobs=1, transformer_list=[
# Select bolean features
('boolean', Pipeline_imb([
('selector', TypeSelector('bool')),
])),
# Select and scale numericals
('numericals', Pipeline_imb([
('selector', TypeSelector(np.number)),
('scaler', StandardScaler()),
])),
# Select and encode categoricals
('categoricals', Pipeline_imb([
('selector', TypeSelector('category')),
('encoder', OneHotEncoder(handle_unknown='ignore')),
]))
])),
])
pipe = Pipeline_imb([
('sampler', RandomUnderSampler(0.1)),
('prep', transformer),
('clf', RandomForestClassifier(n_estimators=500, class_weight='balanced'))
])
Вот ошибка, которую я получаю:
/usr/local/lib/python3.6/dist-packages/sklearn/pipeline.py in __init__(self, steps, memory, verbose)
133 def __init__(self, steps, memory=None, verbose=False):
134 self.steps = steps
--> 135 self._validate_steps()
136 self.memory = memory
137 self.verbose = verbose
/usr/local/lib/python3.6/dist-packages/imblearn/pipeline.py in _validate_steps(self)
144 if isinstance(t, pipeline.Pipeline):
145 raise TypeError(
--> 146 "All intermediate steps of the chain should not be"
147 " Pipelines")
148
TypeError: All intermediate steps of the chain should not be Pipelines
imblearn.pipeline.Pipeline
. - person ayorgo   schedule 26.09.2019